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A Map of Python
fi-le.net, the Fiefdom of Files
PyPi, the Python Software Foundation's package repo, counts over half a million open source projects. Graph layouts are a classic computer science problem, and we can use handy software designed exactly for this kind of task, like Gephi. This lets us use an algorithm of our choice, and after playing around with a few, I find that the default Force Atlas 2, an iterative spring-energy minimization, does the best job.
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